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  1. Protein-protein complexes : analysis, modeling and drug design
  2. Protein-Protein Docking Methods | SpringerLink
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Schlenkrich, J. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, and M.

Protein-protein complexes : analysis, modeling and drug design

All-atom empirical potential for molecular modeling and dynamics studies of proteins. B — Makino, S. Ewing, and I. Mariuzza, R. The basics of binding: mechanisms of antigen recognition and mimicry by antibodies. Marshall, G. Three-dimensional structure of peptide-protein complexes: implications for recognition. Barry, H. Bosshard, R. Dammkoehler, and D. The conformational parameter in drug design: the active analog approach.

In: E. Olson, and Christoffersen, R. Washington, D. ACS Symposium — Head, and R. Affinity prediction: the sina qua non. In: Di Cera, E. Oxford University Press, New York. McCammon, J. Theory of biomolecular recognition. McCoy, A. Epa, and P. Meador, W. Means, and F. Target enzyme recognition by calmodulin: 2,4: o A structure of a calmodulin-peptide complex. Meyer, M. Wilson, and D. Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking.

Miller, D.

How to Study Protein-Ligand Interaction through Molecular Docking

Ligand binding to proteins: the binding landscape model. Miller, M. Schneider, B. Sathyanarayana, M.

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Toth, G. Marshall, L. Clawson, L. Selk, S. Kent, and A. Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2. Miyazawa, S. Self-consistent estimation of inter-residue protein contact energies based on an equilibrium mixture approximation of residues. Moont, G. Gabb, and M. Use of pair potential across protein interfaces in screening predicted docked complexes. Morris, G.

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    Huey, W. Belew, and A. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. Moult, J. Fidelis, A. Zemla, and T. Murzin, A. General architecture of the alpha-helical globule. Nemethy, G. Pottle, and H. Energy parameters in polypeptides. Updating of geometrical parameters, nonbonded interactions, and hydrogen bond interactions for the naturally occuring amino acids.

    Nikiforovich, G. Galaktionov, V. Tseitin, D. Lowis, M. Shenderovich, and G. Galaktionov, J.

    Protein-Protein Docking Methods | SpringerLink

    Balodis, and G. Novel approach to computer modeling of seven-helical transmambrane proteins: current progress in test case of bacteriorhodopsin. Acta Biochim. Novotny, J. Handschumacher, E.

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    Haber, R. Bruccoleri, W. Carlson, D. Fanning, J. Smith, and G. Antigenic determinants in proteins coincide with surface regions accessible to large probes antibody domains.